single-cell-rna-qc
HERRY423/BioNexusscverse scRNA gold chain on .h5ad/.h5 — inspect, convert, MAD QC, optional scanpy.pp.scrublet, preprocess, Harmony/ComBat, PCA-UMAP-Leiden, Wilcoxon markers,…
Scores out of 100 · grade A
2026-08-20Works
40% of the score100/100
- Loads cleanly: valid frontmatter, required fields present, no dangling references.
Maintained
25% of the score100/100
- no commits in the last 12 weeks
- repo is less than two weeks old
Adopted
20% of the score19/100
- 25 stars on the source repo.
Documented
15% of the score85/100
- 700 words with worked examples.
- Ships 22 bundled files.
Install
npx skills add HERRY423/BioNexus/single-cell-rna-qcWhat it says it does
scverse scRNA gold chain on .h5ad/.h5 — inspect, convert, MAD QC, optional scanpy.pp.scrublet, preprocess, Harmony/ComBat, PCA-UMAP-Leiden, Wilcoxon markers, subset, pseudobulk, pydeseq2, stable plots. Use when the user has scRNA-seq counts. Does not assign cell-type labels. rank_genes_groups is not condition DE. Do not call local doublet/ambient helpers SoupX, CellBender, or scDblFinder.
Also in HERRY423/BioNexus
| Artifact | Score | What the check found | Type | Reach | Last commit |
|---|---|---|---|---|---|
| scientific-problem-selectionHERRY423/BioNexus | clean | Skill | 25 stars | today | |
| instrument-data-to-allotropeHERRY423/BioNexus | clean | Skill | 25 stars | today | |
| nextflow-developmentHERRY423/BioNexus | clean | Skill | 25 stars | today | |
| scvi-toolsHERRY423/BioNexus | clean | Skill | 25 stars | today | |
| startHERRY423/BioNexus | clean | Skill | 25 stars | today | |
| spatial-transcriptomicsHERRY423/BioNexus | clean | Skill | 25 stars | today |
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