ucsc-browser
ammawla/encode-toolkitQuery the UCSC Genome Browser REST API to retrieve regulatory tracks, DNA sequences, cCRE annotations, TF binding clusters, and track schemas for any genomic…
Scores out of 100 · grade B+
2026-08-14Works
40% of the score100/100
- Loads cleanly: valid frontmatter, required fields present, no dangling references.
Maintained
25% of the score92/100
- no commits in the last 12 weeks
Adopted
20% of the score20/100
- 26 stars on the source repo.
Documented
15% of the score90/100
- 1,960 words with worked examples.
- Ships 1 bundled file.
Install
npx skills add ammawla/encode-toolkit/ucsc-browserWhat it says it does
Query the UCSC Genome Browser REST API to retrieve regulatory tracks, DNA sequences, cCRE annotations, TF binding clusters, and track schemas for any genomic region. Use when the user wants to look up what regulatory elements exist at a genomic locus, retrieve DNA sequence under peaks, query ENCODE cCREs or TF rPeak clusters from UCSC, check what tracks are available for a genome assembly, get chromatin accessibility across cell types, or cross-reference ENCODE data with UCSC-hosted annotations. Also use when the user mentions UCSC, genome browser, cCRE lookup, SCREEN, TF binding clusters, DNA sequence retrieval, or track data extraction.
Also in ammawla/encode-toolkit
| Artifact | Score | What the check found | Type | Reach | Last commit |
|---|---|---|---|---|---|
| accessibility-aggregationammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| bioinformatics-installerammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| histone-aggregationammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| methylation-aggregationammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| batch-analysisammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| cellxgene-contextammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago |
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