bioinformatics-installer
ammawla/encode-toolkitInstall bioinformatics tools for ENCODE data analysis. Covers CLI tools (BWA, STAR, samtools, MACS2), R/Bioconductor packages (DESeq2, Seurat, ChIPseeker),…
Scores out of 100 · grade A
2026-08-14Works
40% of the score100/100
- Loads cleanly: valid frontmatter, required fields present, no dangling references.
Maintained
25% of the score92/100
- no commits in the last 12 weeks
Adopted
20% of the score20/100
- 26 stars on the source repo.
Documented
15% of the score100/100
- 4,344 words with worked examples.
- Ships 11 bundled files.
Install
npx skills add ammawla/encode-toolkit/bioinformatics-installerWhat it says it does
Install bioinformatics tools for ENCODE data analysis. Covers CLI tools (BWA, STAR, samtools, MACS2), R/Bioconductor packages (DESeq2, Seurat, ChIPseeker), Python packages (Scanpy, deeptools), and Nextflow pipeline infrastructure. Generates conda environments, R install scripts, and Python requirements. Use when the user needs to set up a bioinformatics workstation, install tools for a specific assay, create reproducible environments, or troubleshoot dependency issues. Trigger on: install tools, set up environment, conda create, bioinformatics setup, install R packages, install Bioconductor, install pipeline tools.
Also in ammawla/encode-toolkit
| Artifact | Score | What the check found | Type | Reach | Last commit |
|---|---|---|---|---|---|
| accessibility-aggregationammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| histone-aggregationammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| methylation-aggregationammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| batch-analysisammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| cellxgene-contextammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| cite-encodeammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago |
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