epigenome-profiling
ammawla/encode-toolkitBuild comprehensive epigenomic profiles for tissues or cell types using ENCODE data. Use when the user wants to characterize chromatin states, assemble…
Scores out of 100 · grade B+
2026-08-14Works
40% of the score100/100
- Loads cleanly: valid frontmatter, required fields present, no dangling references.
Maintained
25% of the score92/100
- no commits in the last 12 weeks
Adopted
20% of the score20/100
- 26 stars on the source repo.
Documented
15% of the score90/100
- 4,371 words with worked examples.
- Ships 1 bundled file.
Install
npx skills add ammawla/encode-toolkit/epigenome-profilingWhat it says it does
Build comprehensive epigenomic profiles for tissues or cell types using ENCODE data. Use when the user wants to characterize chromatin states, assemble histone modification panels, create epigenomic landscapes, run ChromHMM segmentation, identify super-enhancers or bivalent domains, profile regulatory elements across a biosample, or understand epigenetic regulation in a specific biological context. Covers histone marks, chromatin accessibility, TF binding, transcription, DNA methylation, and 3D genome structure.
Also in ammawla/encode-toolkit
| Artifact | Score | What the check found | Type | Reach | Last commit |
|---|---|---|---|---|---|
| accessibility-aggregationammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| bioinformatics-installerammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| histone-aggregationammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| methylation-aggregationammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| batch-analysisammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| cellxgene-contextammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago |
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