disease-research
ammawla/encode-toolkitUse ENCODE functional genomics data for disease mechanism research. Use when the user wants to connect GWAS variants to regulatory elements, annotate…
Scores out of 100 · grade B+
2026-08-14Works
40% of the score100/100
- Loads cleanly: valid frontmatter, required fields present, no dangling references.
Maintained
25% of the score92/100
- no commits in the last 12 weeks
Adopted
20% of the score20/100
- 26 stars on the source repo.
Documented
15% of the score90/100
- 2,872 words with worked examples.
- Ships 1 bundled file.
Install
npx skills add ammawla/encode-toolkit/disease-researchWhat it says it does
Use ENCODE functional genomics data for disease mechanism research. Use when the user wants to connect GWAS variants to regulatory elements, annotate disease-associated loci with functional data, identify therapeutic targets from epigenomic data, build disease regulatory models, cross-reference with clinical trials and drug databases, or conduct any disease-focused, pathology-driven, or clinical variant interpretation workflow. Covers the full pipeline from disease-tissue mapping through GWAS variant annotation, heritability enrichment, cancer epigenomics, drug target identification, and clinical trial cross-referencing. Integrates ENCODE with Open Targets, PubMed, ClinicalTrials.gov, and bioRxiv.
Also in ammawla/encode-toolkit
| Artifact | Score | What the check found | Type | Reach | Last commit |
|---|---|---|---|---|---|
| accessibility-aggregationammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| bioinformatics-installerammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| histone-aggregationammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| methylation-aggregationammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| batch-analysisammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago | |
| cellxgene-contextammawla/encode-toolkit | clean | Skill | 26 stars | 19 days ago |
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