bio-biomart-queries

lilinji/GeneTind-Life-Skills

SkillLoads cleanly

Bulk-query Ensembl BioMart (and other BioMart instances) for cross-database ID mapping, gene/transcript/exon coordinates, and ortholog tables. Use when…

Scores
out of 100 · grade B+

2026-08-22

Works

40% of the score

100/100

Loads cleanly: valid frontmatter, required fields present, no dangling references.

Maintained

25% of the score

94/100

no commits in the last 12 weeks
no license file

Adopted

20% of the score

13/100

8 stars on the source repo.

Documented

15% of the score

91/100

1,590 words with worked examples.
Ships 4 bundled files.

Loads cleanly. Every structural check Claude Code needs to register this passed. Last commit today.

Install

npx skills add lilinji/GeneTind-Life-Skills/bio-biomart-queries

What the check found

Every finding on this listing, and what each one means for whether it loads.
Finding	What it means
No license	The repository ships no license file, so the reuse terms are unclear.

What it says it does

Bulk-query Ensembl BioMart (and other BioMart instances) for cross-database ID mapping, gene/transcript/exon coordinates, and ortholog tables. Use when batch-converting Ensembl IDs to other namespaces (HGNC, RefSeq, UniProt, Entrez), pulling gene coordinate tables for thousands of genes, building ortholog wide-tables across species, or replacing slow Ensembl REST loops with one-shot bulk export. Encodes BioMart's XML query format, R biomaRt vs Python pybiomart trade-off, mart-vs-dataset hierarchy, and the URL endpoint that's BioMart-specific (separate from rest.ensembl.org).

Every number above came out of reading the file and its repository. Nothing is a judgement call, nothing is a model’s opinion, and nothing can be paid for. The full method is published. Source last committed 2026-08-21.

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