pacsomatic
K-Dense-AI/scientific-agent-skillsOperator toolkit for nf-core/pacsomatic matched tumor-normal workflows from BAM inputs. Use this skill when the user needs to validate run inputs, generate…
Scores out of 100 · grade A+
2026-08-22Works
40% of the score100/100
- Loads cleanly: valid frontmatter, required fields present, no dangling references.
Maintained
25% of the score100/100
- no commits in the last 12 weeks
Adopted
20% of the score62/100
- 34,091 stars on the source repo.
Documented
15% of the score93/100
- 589 words with worked examples.
- Ships 6 bundled files.
Install
npx skills add K-Dense-AI/scientific-agent-skills/pacsomaticWhat it says it does
Operator toolkit for nf-core/pacsomatic matched tumor-normal workflows from BAM inputs. Use this skill when the user needs to validate run inputs, generate pacsomatic-compliant samplesheets, prepare reproducible Nextflow launch artifacts, run locally or submit to schedulers (LSF/Slurm/PBS/SGE), and triage execution failures. Triggers on requests to run pacsomatic, prepare launch commands/scripts, perform dry-run checks, or troubleshoot pipeline startup and scheduler submission errors.
Also in K-Dense-AI/scientific-agent-skills
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|---|---|---|---|---|---|
| arboretoK-Dense-AI/scientific-agent-skills | clean | Skill | 1,094 installs | 2 days ago | |
| bidsK-Dense-AI/scientific-agent-skills | clean | Skill | 34k stars | 2 days ago | |
| clinical-decision-supportK-Dense-AI/scientific-agent-skills | clean | Skill | 1,111 installs | 2 days ago | |
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| get-available-resourcesK-Dense-AI/scientific-agent-skills | clean | Skill | 1,171 installs | 2 days ago | |
| imaging-data-commonsK-Dense-AI/scientific-agent-skills | clean | Skill | 1,101 installs | 2 days ago |
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